--- 
"[bifooxir]": 
  MOTIF_LENGTH: 
    :description: motif length identified by bifooxi tool
    :value: 11
  SIGNIFICANCE_HIGH: 
    :description: chi-square criterion significance upper border
    :value: 0.01
  SIGNIFICANCE_LOW: 
    :description: chi-square criterion significance lower border
    :value: 0.05
  SIGNIFICANCE_DELTA: 
    :description: chi-square criterion significance delta
    :value: 0.005
"[bifooxi_cu]": 
  MOTIF_LENGTH: 
    :description: motif length identified by chi-square criterion
    :value: 8
  SIGNIFICANCE_LEVEL: 
    :description: chi-square criterion significance level
    :value: 0.05
  MONTECARLO_COUNT: 
    :description: number of montecarlo iterations for background sampling
    :value: 1
"[bifooxi]": 
  MOTIF_LENGTH: 
    :description: motif length identified by chi-square criterion
    :value: 8
  SIGNIFICANCE_LEVEL: 
    :description: chi-square criterion significance level
    :value: 0.05
  MONTECARLO_COUNT: 
    :description: number of montecarlo iterations for background sampling
    :value: 1024
"[bigfoot]": 
  MOTIF_LENGTH: 
    :description: motif length used
    :value: 15
  LEADER_DELTA: 
    :description: delta for word-pair corresponding to matrix with the best final discrete information content
    :value: 12
  POSITION_INFOCOD: 
    :description: best discrete information content for motif ftz (bismark=FTZ_motif_15.xml)
    :value: 
    - -1.22496460842446
    - -1.18782385025796
    - -1.09464846195263
    - -1.07013299552261
    - -1.23355423100653
    - -1.23097126266717
    - -1.23702528366688
    - -1.10928026007026
    - -1.2581203898444
    - -1.01969811855774
    - -0.789246954786416
    - -0.480451839174154
    - 0.0
    - -0.819760189840615
    - -0.126727909271546
  EXTENDED_MODE: 
    :description: extended search mode
    :value: false
  BEST_PAIR: 
    :description: words pair used for initial PCM construction
    :value: 
    - GCGGCTAGGAATTAA
    - ATTAAATATCAATCA
  MOTIF_LOGO: 
    :path: FTZ_motif_15.xml.png
    :description: resulting motif logo
  FLANK_LENGTH: 
    :description: flank length used
    :value: 10
  TOTAL_INFOCOD: 
    :description: best discrete information content for motif ftz (bismark=FTZ_motif_15.xml)
    :value: -13.8824063550434
  LEADER_PHASE: 
    :description: <Footstep> search phase corresponding to matrix with the best final discrete information content
    :value: 0
  SEQUENCE_COUNT: 
    :description: sequence set size
    :value: 66
"[bifoosig]": 
  MIN_SEQUENCE_LENGTH: 
    :description: length of the shortest sequence in the set
    :value: 8
  EXTENDED_MODE: 
    :description: extended search mode
    :value: "false"
  LEADER_DELTA: 
    :description: delta for word-pair corresponding to matrix with the best final discrete information content for different motif lengths
    :value: 
    - 0
    - 0
    - 1
    - 3
    - 4
    - 9
    - 5
    - 4
    - 10
    - 12
  ADD_FLANK_LENGTH: 
    :description: additional flank length
    :value: 1
  MIN_MOTIF_LENGTH: 
    :description: minimum motif length allowed
    :value: 6
  MOTIF_FOUND: 
    :description: no motif found till length 15
    :value: false
  TOTAL_INFOCOD: 
    :description: best total discrete information content for different motif lengths
    :value: 
    - -3.33230564580566
    - -4.44511713296904
    - -5.61457654752068
    - -6.78103993298432
    - -7.97562334305904
    - -9.14071105898059
    - -10.2851023187472
    - -11.4787555728265
    - -12.7009487832829
    - -13.8824063550434
  LEADER_PHASE: 
    :description: <Footstep> search phase corresponding to matricx with the best final discrete information content for different motif lengths
    :value: 
    - 0
    - 0
    - 0
    - 0
    - 0
    - 0
    - 0
    - 0
    - 0
    - 0
  LENGTH_MODE: 
    :description: motif length identification mode
    :value: disabled
  SEQUENCE_COUNT: 
    :description: total number of sequences in the set
    :value: 66
  START_FLANK_LENGTH: 
    :description: starting flank length used for the shortest motif
    :value: 1
  MAX_MOTIF_LENGTH: 
    :description: maximum motif length allowed
    :value: 15
"[bifooxi_cons]": 
  MOTIF_LENGTH: 
    :description: motif length identified by chi-square criterion
    :value: 11
  SIGNIFICANCE_LEVEL: 
    :description: chi-square criterion significance level
    :value: 0.05
  MONTECARLO_COUNT: 
    :description: number of montecarlo iterations for background sampling
    :value: 2048
"[segexbsm]": 
  BISMARK_OUT: 
    :path: FTZ_footprints.xml
    :description: segments extracted from bismark db using source_id=BE_DMEL, factor_name=ftz
"[flkscn3]": 
  MONTECARLO_COUNT: 
    :description: number of montecarlo iterated words for PWMs longer than 10
    :value: 1048576
"[flancalc]": 
  FLANK_LENGTH: 
    :description: calculated flank length
    :value: 3
"[pmfin]": 
  MONTECARLO_COUNT: 
    :description: number of montecarlo iterated words for PWMs longer than 10
    :value: 1048576
  SEQUENCE_COUNT: 
    :description: initial sequence count
    :value: 66